A series of successful publications by Jakub Tomczak and Guszti Eiben

Jakub Tomczak and Guszti Eiben, together with their collaborators from the UvA were recently involved in a series of successful publications:

02/15/2021 | 5:08 PM


1) An article on COVID-19. We have identified very promising candidates for drugs and provided some properties of SARS-CoV-2 using computational tools. A collaboration among UvA - VU - WRUT (Wroclaw Univ. of Technology, Poland).

Scientific Reports: "Identification of ebselen and its analogues as potent covalent inhibitors of papain-like protease from SARS-CoV-2"

2) An article on a method and software for combining the gut microbiota models with a human genome-scale model. It is a systems biology paper. A collaboration between UvA - VU.

Bioinformatics: "M2R: a Python add-on to cobrapy for modifying human genome-scale metabolic reconstruction using the gut microbiota models"

3) An article on genome-scale modeling of bone cancer under different nutrient availability conditions. It is a systems biology paper. A collaboration between UvA - VU.

Int. Journal on Molecular Sciences: "GEM-based metabolic profiling for Human Bone Osteosarcoma under different glucose and glutamine availability"

4) An article on parameter identification of dynamical models using population-bsed methods (incl. evolutionary algorithms). A collaboration between UvA - VU.

Processes: "Population-Based Parameter Identification for Dynamical Models of Biological Networks with an Application to Saccharomyces cerevisiae"