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Header Bioinformatics

Header Embedded Core Initiatives

Header Collaborations

Header Online Journals

Header Database Searching

Header Other Bioinformatics Resources

Header Bioinformatics Centres

  • EBI - European Bioinformatics Institute
  • EMBL - European Molecular Biology Laboratory
  • NCBI - National Center for Biotechnology Information
  • CBS - Center for Biological Sequence Analysis, Technical University of Denmark
  • BSM - Biomolecular Structure and Modelling at UCL
  • Sanger centre, Hinxton, England
  • HUM-MOLGEN - Human Molecular Genetics
  • Centre of Bioinformatics - Peking
Header Multiple Sequence Alignment
  • MUSCLE - Multiple sequence alignment
  • T-COFFEE - Multiple sequence alignment
  • dbClustal - Multiple sequence alignment (part of PipeAlign track)
  • Clustal W - Multiple sequence alignment
  • SAM - Sequence alignment and modeling system (using HMMs)
  • AMAS - Analysis of multiple alignments (geoff Barton)
  • HMMER - Multiple sequence alignment
  • DIALIGN 2 - Multiple sequence alignment

Header Secondary Structure Prediction

  • PredictProtein - Server to predict protein structure
  • PSI-Pred - PSI-BLAST-based protein secondary structure prediction

Header Modelling and Data Analysis

  • DALI - Comparison of protein structures in 3D
  • Pratt - Pattern discovery online
  • PSA - Protein Sequence Analysis: fits a structure model to your sequence
  • Block Maker - At Fred Hutchinson Cancer Research Center